+ indep. WoS citations


CV   -   Researcher ID   -   Google Scholar   -   MTMT   -   Reviewing

  Refereed research papers    29
Reviews and Previews4
Cumulated impact factor157   reviews with 1/3 multiplier
Web of Sci.   G.Scholar   MTMT
Citations: All / Independent4383 / n.a.10714 / n.a.5980 / 5767
H index182219
 
  Book chapters   3   (note: Google Scholar and MTMT include book chapters)
Ismeretterjesztő cikkek -- popular science articles

Reviews and Previews

Scientometrics: Untangling the topics
Szanto-Varnagy A, Pollner P, Vicsek T, Farkas I J
Perspective in National Science Review 1, 343-345 (2014)
ABSTRACT | FULL TEXT PDF

Network-based tools in the identification of novel drug targets
Farkas I J, Korcsmáros T, Kovács I A, Mihalik Á, Palotai R, Simkó G I, Szalay K Z, Szalay-Bekő M, Vellai T, Wang S, Csermely P
Presentation in Science Signaling 4, pt3 (2011)
ABSTRACT | FULL TEXT PDF | SLIDESHOW (668kB zip)

Exploring transcriptional regulatory networks in the worm
Farkas I J, Beg Q K, Oltvai Z N
Preview article in Cell 125, 1032-1034 (2006)
ABSTRACT | FULL TEXT PDF

Equilibrium statistical mechanics of network structures
Farkas I, Derényi I, Palla G, Vicsek T
Review article in Lect. Notes in Phys. 650, 163-187 (2004)
ABSTRACT | FULL TEXT PDF

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D.Sc. at the Hungarian Academy of Sciences (HAS), MTA doktori dolgozat

Description of the "D.Sc." degree. Dissertation and abstract book (in Hungarian): Dolgozat PDF, Tézisfüzet PDF.

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Refereed research publications

Quantifying the changing role of past publications
Orosz K, Farkas I J, Pollner P
Scientometrics 108, 829 (2016)
ABSTRACT | FULL TEXT PDF

Keeping speed and distance for aligned motion
Farkas I J, Kun J, Jin Y, He G, Xu M
Phys. Rev. E 91, 012807 (2015)
ABSTRACT | FULL TEXT PDF

Collective Crowd Formation Transform with Mutual Information–Based Runtime Feedback
Xu M, Wu Y, Ye Y, Farkas I, Jiang H, Deng Z
Computer Graphics Forum 34, 60 (2015)
VIDEO (51MB) | ABSTRACT | FULL TEXT PDF

SignaLink 2 -- a signaling pathway resource with multi-layered regulatory networks
Fazekas D *, Koltai M *, Türei D *, Módos D, Pálfy M, Dúl Z, Zsákai L, Szalay-Bekő M, Lenti K, Farkas I J, Vellai T, Csermely P, Korcsmáros T (* equal contributions)
BMC Systems Biology 7, 7 (2013)
ABSTRACT | FULL TEXT PDF
Science Signaling Netwatch | Perspective in PLoS Comp Biol by T. Santra, W. Kolch and B. N. Kholodenko

Linking proteins to signaling pathways for experiment design and evaluation
Farkas I J, Szántó-Várnagy Á, Korcsmáros T
PLoS ONE 7, e36202 (2012)
ABSTRACT | FULL TEXT PDF
http://PathwayLinker.org -- identify and visualize the first neighbor interactor network of queried proteins and analyze their signaling pathway memberships

Signalogs: orthology-based identification of novel signaling pathway components in three metazoans
Korcsmáros T *, Szalay M S *, Rovó P, Palotai R, Fazekas D, Lenti K, Farkas I J, Csermely P, Vellai T (* equal contributions)
PLoS ONE 6, e19240 (2011)
ABSTRACT | FULL TEXT PDF
Predict novel signaling pathway components based on orthology at http://SignaLink.org/signalog

Uniformly curated signaling pathways reveal tissue-specific cross-talks and support drug target discovery
Korcsmáros T *, Farkas I J *, Szalay M S, Rovó P, Fazekas D, Spiró Z, Böde C, Lenti K, Vellai T, Csermely P (* equal contributions)
Bioinformatics 26, 2042 (2010)
ABSTRACT | FULL TEXT PDF | SUPPLEMENT PDF
Website:  http://SignaLink.org

Human microRNAs co-silence in well-separated groups and have different predicted essentialities
Boross G, Orosz K, Farkas I J
Bioinformatics 25, 1063 (2009)
ABSTRACT | FULL TEXT PDF | SUPPLEMENT PDF | POWER POINT PRESENTATION
4 DATA FILES FOR FIGURE 1 (13MB zip file, microRNA-mRNA pairs (Oct.08) from miRBase, PicTar, PITA, TargetScan)

Fundamental statistical features and self-similar properties of tagged networks
Palla G, Farkas I J, Pollner P, Derényi I, Vicsek T
New J. Phys. 10, 123026 (2008)
ABSTRACT | FULL TEXT PDF | DOWNLOAD NETWORK DATA

Centrality properties of directed module members in social networks
Pollner P, Palla G, Ábel D, Vicsek A, Farkas I J, Derényi I, Vicsek T
Physica A 387, 4959 (2008)
ABSTRACT | FULL TEXT PDF

Directed network modules
Palla G, Farkas I J, Pollner P, Derényi I, Vicsek T
New J. Phys. 9, 186 (2007)
ABSTRACT | FULL TEXT PDF | DOWNLOAD NETWORK DATA

Weighted network modules
Farkas I J, Ábel D, Palla G, Vicsek T
New J. Phys. 9, 180 (2007)
ABSTRACT | FULL TEXT PDF

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Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae
Farkas I J, Wu C, Chennubhotla C, Bahar I, Oltvai Z N
BMC Bioinformatics 7, 478 (2006)
ABSTRACT | FULL TEXT PDF | SUPPLEMENT PDF

Initiating a Mexican wave: an instantaneous collective decision with both short and long range interactions
Farkas I J, Vicsek T
Physica A 369, 830-840 (2006)
ABSTRACT | COLOR FULL TEXT PDF with data: videos, online poll | B/W PDF (published version)

CFinder: Locating cliques and overlapping modules in biological networks
Adamcsek B, Palla G, Farkas I J, Derényi I, Vicsek T
Bioinformatics 22, 1021-1023 (2006)
ABSTRACT | COLOR FULL TEXT PDF | B/W PDF (printed version)
WEBPAGE with FREE SOFTWARE for finding overlapping clusters/communities in networks

Uncovering the overlapping community structure of complex networks in nature and society
Palla G, Derényi I, Farkas I, Vicsek T
Nature 435, 814-818 (2005)
ABSTRACT | FULL TEXT PDF | SUPPLEMENT PDF
WEBPAGE with FREE SOFTWARE for finding overlapping clusters/communities in networks

Reverse engineering of linking preferences from network restructuring
Palla G, Farkas I, Derényi I, Barabasi A L, Vicsek T
Phys. Rev. E 70, 046115 (2004)
ABSTRACT | FULL TEXT PDF

Topological phase transitions of random networks
Derényi I, Farkas I, Palla G, Vicsek T
Physica A 334, 583 (2004)
ABSTRACT | FULL TEXT PDF

Statistical mechanics of topological phase transitions in networks
Palla G, Derényi I, Farkas I, Vicsek T
Phys. Rev. E 69, 046117 (2004)
ABSTRACT | FULL TEXT PDF

Human waves in stadiums
Farkas I, Helbing D, Vicsek T
Physica A 330 (1-2), 18-24 (2003)
ABSTRACT | FULL TEXT PDF

The topology of the transcription regulatory network in the yeast, Saccharomyces cerevisiae
Farkas I, Jeong H, Vicsek T, Barabasi A L, Oltvai ZN
Physica A 318 (3-4), 601-612 (2003)
ABSTRACT | COLOR FULL TEXT PDF | SUPPLEMENT PDF | B/W PDF (printed version)

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Networks in life: scaling properties and eigenvalue spectra
Farkas I, Derenyi I, Jeong H, Neda Z, Oltvai ZN, Ravasz E, Schubert A, Barabasi A L, Vicsek T
Physica A 314 (1-4), 25-34 (2002)
ABSTRACT | FULL TEXT PDF

Social behaviour: Mexican waves in an excitable medium
Farkas I, Helbing D, Vicsek T
Nature 419, 131-132 (2002)
ABSTRACT | FULL TEXT PDF | WEBPAGE

Spectra of "real-world" graphs: Beyond the semicircle law
Farkas I J, Derényi I, Barabasi A L, Vicsek T
Phys. Rev. E 64, 026704 (2001)
ABSTRACT | FULL TEXT PDF
DOWNLOAD SOURCE CODE of the shift-square Lanczos method

Self-organizing pedestrian movement
Helbing D, Molnar P, Farkas I J, Bolay K
Environment and Planning B: Planning and Design 28, 361-383 (2001)
ABSTRACT | FULL TEXT PDF
DOWNLOAD SOURCE CODE of the active walker model

Simulating dynamical features of escape panic
Helbing D, Farkas I, Vicsek T
Nature 407, 487-490 (2000)
ABSTRACT | FULL TEXT PDF
On the FRONT COVER OF NATURE | NEWS and VIEWS article in Nature | WEBPAGE
DOWNLOAD SOURCE CODE of the pedestrian escape panic simulations

Freezing by heating in a driven mesoscopic system
Helbing D, Farkas I J, Vicsek T
Phys. Rev. Lett. 84, 1240-1243 (2000)
ABSTRACT | FULL TEXT PDF | NEWS and VIEWS article in Nature

Application of statistical mechanics to collective motion in biology
Vicsek T, Czirok A, Farkas I J, Helbing D
Physica A 274 (1-2), 182-189 (1999)
ABSTRACT | FULL TEXT PDF

Inter-grain coupling in nanocrystalline soft magnets
Kemeny T, Balogh J, Farkas I, Kaptas D, Kiss L F, Pusztai T, Toth L, Vincze I
Journal of Physics: Condensed Matter 10, L221-L227 (1998)
ABSTRACT | FULL TEXT PDF

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Book chapters

Uniform curation protocol of metazoan signaling pathways to predict novel signaling components
Pálfy M, Farkas IJ, Vellai T, Korcsmáros T
Methods Mol Biol 1021:285-297 (2013)
ABSTRACT | FULL TEXT PDF

Simulation of pedestrian crowds in normal and evacuation situations
Helbing D, Farkas IJ, Molnár P, Vicsek T
Pages 21-58 in: Schreckenberg M, Sharma SD (eds.)
Pedestrian and Evacuation Dynamics (Springer, Berlin, 2002)
ABSTRACT | FULL TEXT PDF

Crowd disasters and simulation of panic situations
Helbing D, Farkas IJ, Vicsek T
Pages 334-354 in: Bunde A, Kropp J, Schellnhuber H-J (eds.)
The Science of Disasters (Springer, Berlin, 2002)
ABSTRACT

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Popular science (in Hungarian) Ismeretterjesztő cikkek magyarul

Programajánló az "Atomktól a csillagokig" ismeretterjesztő előadás-sorozathoz
Rövid interjú: Farkas Illés. Készítette: Nemoda Bence
Természettudományi Közlöny 141. évf. 10. füzet, 465. oldal (2010)
CIKK PDF

Harmonia Connectis. A rapperektől a molekuláris biológiáig
Interjú: Palla Gergely, Farkas Illés. Készítette: Mécs Anna
Élet és Tudomány 2010/23, 714-716. oldal
CIKK PDF

Komplex hálózatok a molekuláris biológiában
Farkas Illés
Fizikai Szemle 2008/nov
CIKK PDF

A természet és a társadalom komplex hálózataiban található átfedő csoportosulások feltárása
Palla Gergely, Derényi Imre, Farkas Illés, Pollner Péter, Vicsek Tamás
Műszaki Szemle 42, 9-18 (2008)
CIKK PDF (11MB) a 9-18. oldalon

Hálózatok mindenütt
Farkas Illés
Fizikai szemle 2007/06, p.216
CIKK PDF a 216-218. oldalon

Csoportosulások szociológiai, technológiai és biológiai hálózatokban
Derényi Imre, Farkas Illés, Palla Gergely, Vicsek Tamás
Magyar Tudomány 2006/11, p.1319
CIKK HTML

Hogyan mozog a tömeg...
Farkas Illés
InterPress Magazin 2006/nov

Mexikói hullámok gerjeszthető közegben
Farkas Illés, Dirk Helbing, Vicsek Tamás
Fizikai Szemle 2003/7, pp.246-247
CIKK PDF

A menekülési pánik dinamikai tulajdonságainak szimulációja
Dirk Helbing, Farkas Illés, Vicsek Tamás
Fizikai Szemle 2000/okt, pp.329-332
CIKK PDF

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ResearcherID  | 

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Adapted from the opening presentation (by P. Csermely) at the International Conference on Systems Biology of Human Disease (SBHD) in Boston, Massachusetts, 16 to 18 June 2010.

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